Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs1904906 chr8:39942372 A/G 8.94E-5 119 39.75 48.13 28.43 KM Plot
THYM rs1904940 chr4:12512964 T/C 9.21E-7 119 38.58 54.9 12.78 KM Plot
THYM rs1904941 chr4:12513025 T/C 9.42E-7 119 38.33 57.27 12.78 KM Plot
THYM rs190578659 chr4:70083727 C/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs190867458 chr11:125581861 C/T 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs191221866 chr12:114106972 C/G 0.00014 119 48 34.87 15.05 KM Plot
THYM rs1913343 chr1:227361299 T/C 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs192323137 chr1:227463649 G/A 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs1924209 chr13:22521351 T/C 0.000281 118 41.77 32.7 27.1 KM Plot
THYM rs1924210 chr13:22521282 C/T 0.000175 119 41.77 35.42 27.1 KM Plot
THYM rs1924975 chr13:26630285 A/G 4.71E-6 116 13.75 46.68 38.58 KM Plot
THYM rs1943917 chr18:71780717 A/C 1.86E-9 119 29.82 46.68 38.33 KM Plot
THYM rs1949227 chr1:227348850 C/T 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs1979923 chr5:168265891 T/C 0.000305 116 48 30.03 38.13 KM Plot
THYM rs1982286 chr2:30749722 C/G 1.71E-8 118 36.4 50.07 33.13 KM Plot